Warning, you specified a working directory via "-w" Keep in mind that RAxML only accepts absolute path names, not relative ones! Found a total of 6 taxa in first tree of tree collection /opt/mosga/snakemake/../gui/uploads/195325c3/phylogenetic/raxml/bootstrapping/RAxML_bootstrap.tree-bo Expecting all remaining trees in collection to have the same taxon set add [18c62eb443] add [8804969e79] add [9108fb9b75] add [b0a0c70ba9] add [5b6fc498bc] add [a5559a11b7] WARNING: RAxML is not checking sequences for duplicate seqs and sites with missing data! This is the RAxML Master Pthread This is RAxML Worker Pthread Number: 1 This is RAxML Worker Pthread Number: 2 This is RAxML Worker Pthread Number: 3 This is RAxML Worker Pthread Number: 4 This is RAxML Worker Pthread Number: 6 This is RAxML Worker Pthread Number: 5 This is RAxML Worker Pthread Number: 7 This is RAxML Worker Pthread Number: 8 This is RAxML Worker Pthread Number: 9 This is RAxML Worker Pthread Number: 10 This is RAxML Worker Pthread Number: 12 This is RAxML Worker Pthread Number: 13 This is RAxML Worker Pthread Number: 11 This is RAxML version 8.2.12 released by Alexandros Stamatakis on May 2018. With greatly appreciated code contributions by: Andre Aberer (HITS) Simon Berger (HITS) Alexey Kozlov (HITS) Kassian Kobert (HITS) David Dao (KIT and HITS) Sarah Lutteropp (KIT and HITS) Nick Pattengale (Sandia) Wayne Pfeiffer (SDSC) Akifumi S. Tanabe (NRIFS) Charlie Taylor (UF) RAxML Bipartition Computation: Drawing support values from trees in file /opt/mosga/snakemake/../gui/uploads/195325c3/phylogenetic/raxml/bootstrapping/RAxML_bootstrap.tree-bo onto tree in file /opt/mosga/snakemake/../gui/uploads/195325c3/phylogenetic/raxml/maximum_likelihood/RAxML_bestTree.tree-ml RAxML was called as follows: /opt/mosga/tools/RAxML/raxmlHPC-PTHREADS-AVX -f b -T 14 -m GTRCAT -z /opt/mosga/snakemake/../gui/uploads/195325c3/phylogenetic/raxml/bootstrapping/RAxML_bootstrap.tree-bo -t /opt/mosga/snakemake/../gui/uploads/195325c3/phylogenetic/raxml/maximum_likelihood/RAxML_bestTree.tree-ml -n tree -o a5559a11b7 -w /opt/mosga/snakemake/../gui/uploads/195325c3/phylogenetic/raxml/ Found 1 tree in File /opt/mosga/snakemake/../gui/uploads/195325c3/phylogenetic/raxml/maximum_likelihood/RAxML_bestTree.tree-ml Found 25 trees in File /opt/mosga/snakemake/../gui/uploads/195325c3/phylogenetic/raxml/bootstrapping/RAxML_bootstrap.tree-bo Found 1 tree in File /opt/mosga/snakemake/../gui/uploads/195325c3/phylogenetic/raxml/maximum_likelihood/RAxML_bestTree.tree-ml Time for Computation of Bipartitions 0.006552 Tree with bipartitions written to file: /opt/mosga/snakemake/../gui/uploads/195325c3/phylogenetic/raxml/RAxML_bipartitions.tree Tree with bipartitions as branch labels written to file: /opt/mosga/snakemake/../gui/uploads/195325c3/phylogenetic/raxml/RAxML_bipartitionsBranchLabels.tree Execution information file written to : /opt/mosga/snakemake/../gui/uploads/195325c3/phylogenetic/raxml/RAxML_info.tree