windowmasker.log

                    

                                                                      

                      

                        

                          
vecscreen_analyse.log

                        

                        
                      

                      

                      

                    

                                                                      

                      

                        

                          
tbl2asn.log

                        

                        
                      

                      

                      
[tbl2asn] Validating 7614fdf12303399203ee803b_n



                    

                                                                      

                      

                        

                          
plastids.log

                        

                        
                      

                      

                      
diamond v2.0.7.145 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 4
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: /opt/mosga/snakemake/../gui/uploads/dd02ad62/genes
Opening the database...  [0.007s]
#Target sequences to report alignments for: 25
Reference = /opt/mosga/tools/diamond/plastid.dmnd
Sequences = 10966
Letters = 5032614
Block size = 4000000000
Opening the input file...  [0.115s]
Opening the output file...  [0s]
Loading query sequences...  [0.371s]
Masking queries...  [0.77s]
Building query seed set...  [0.037s]
Algorithm: Double-indexed
Building query histograms...  [0.402s]
Allocating buffers...  [0s]
Loading reference sequences...  [0.012s]
Masking reference...  [0.058s]
Initializing temporary storage...  [0s]
Building reference histograms...  [0.032s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 1/4.
Building reference seed array...  [0.027s]
Building query seed array...  [0.255s]
Computing hash join...  [0.043s]
Building seed filter...  [0s]
Searching alignments...  [0.007s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 2/4.
Building reference seed array...  [0.028s]
Building query seed array...  [0.202s]
Computing hash join...  [0.049s]
Building seed filter...  [0s]
Searching alignments...  [0.006s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 3/4.
Building reference seed array...  [0.029s]
Building query seed array...  [0.285s]
Computing hash join...  [0.054s]
Building seed filter...  [0s]
Searching alignments...  [0.006s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 4/4.
Building reference seed array...  [0.023s]
Building query seed array...  [0.225s]
Computing hash join...  [0.049s]
Building seed filter...  [0s]
Searching alignments...  [0.006s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 1/4.
Building reference seed array...  [0.031s]
Building query seed array...  [0.21s]
Computing hash join...  [0.043s]
Building seed filter...  [0s]
Searching alignments...  [0.006s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 2/4.
Building reference seed array...  [0.027s]
Building query seed array...  [0.227s]
Computing hash join...  [0.055s]
Building seed filter...  [0s]
Searching alignments...  [0.005s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 3/4.
Building reference seed array...  [0.03s]
Building query seed array...  [0.283s]
Computing hash join...  [0.049s]
Building seed filter...  [0s]
Searching alignments...  [0.006s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 4/4.
Building reference seed array...  [0.022s]
Building query seed array...  [0.205s]
Computing hash join...  [0.052s]
Building seed filter...  [0s]
Searching alignments...  [0.006s]
Deallocating buffers...  [0s]
Clearing query masking...  [0.006s]
Computing alignments...  [0.398s]
Deallocating reference...  [0s]
Loading reference sequences...  [0s]
Deallocating buffers...  [0.006s]
Deallocating queries...  [0.005s]
Loading query sequences...  [0s]
Closing the input file...  [0.001s]
Closing the output file...  [0.003s]
Closing the database file...  [0s]
Deallocating taxonomy...  [0s]
Total time = 4.909s
Reported 584 pairwise alignments, 584 HSPs.
39 queries aligned.


                    

                                                                      

                      

                        

                          
mitos.log

                        

                        
                      

                      

                      
diamond v2.0.7.145 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 4
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: /opt/mosga/snakemake/../gui/uploads/dd02ad62/genes
Opening the database...  [0.01s]
#Target sequences to report alignments for: 25
Reference = /opt/mosga/tools/diamond/mito.dmnd
Sequences = 29848
Letters = 7941243
Block size = 4000000000
Opening the input file...  [0.137s]
Opening the output file...  [0s]
Loading query sequences...  [0.362s]
Masking queries...  [0.775s]
Building query seed set...  [0.029s]
Algorithm: Double-indexed
Building query histograms...  [0.378s]
Allocating buffers...  [0s]
Loading reference sequences...  [0.018s]
Masking reference...  [0.124s]
Initializing temporary storage...  [0s]
Building reference histograms...  [0.067s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 1/4.
Building reference seed array...  [0.046s]
Building query seed array...  [0.262s]
Computing hash join...  [0.05s]
Building seed filter...  [0s]
Searching alignments...  [0.015s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 2/4.
Building reference seed array...  [0.045s]
Building query seed array...  [0.283s]
Computing hash join...  [0.052s]
Building seed filter...  [0s]
Searching alignments...  [0.011s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 3/4.
Building reference seed array...  [0.056s]
Building query seed array...  [0.287s]
Computing hash join...  [0.055s]
Building seed filter...  [0s]
Searching alignments...  [0.013s]
Processing query block 1, reference block 1/1, shape 1/2, index chunk 4/4.
Building reference seed array...  [0.042s]
Building query seed array...  [0.235s]
Computing hash join...  [0.054s]
Building seed filter...  [0s]
Searching alignments...  [0.012s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 1/4.
Building reference seed array...  [0.037s]
Building query seed array...  [0.246s]
Computing hash join...  [0.055s]
Building seed filter...  [0.001s]
Searching alignments...  [0.012s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 2/4.
Building reference seed array...  [0.045s]
Building query seed array...  [0.277s]
Computing hash join...  [0.06s]
Building seed filter...  [0.004s]
Searching alignments...  [0.011s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 3/4.
Building reference seed array...  [0.047s]
Building query seed array...  [0.31s]
Computing hash join...  [0.052s]
Building seed filter...  [0s]
Searching alignments...  [0.01s]
Processing query block 1, reference block 1/1, shape 2/2, index chunk 4/4.
Building reference seed array...  [0.04s]
Building query seed array...  [0.238s]
Computing hash join...  [0.057s]
Building seed filter...  [0s]
Searching alignments...  [0.01s]
Deallocating buffers...  [0s]
Clearing query masking...  [0.006s]
Computing alignments...  [0.939s]
Deallocating reference...  [0s]
Loading reference sequences...  [0s]
Deallocating buffers...  [0.005s]
Deallocating queries...  [0.004s]
Loading query sequences...  [0s]
Closing the input file...  [0.001s]
Closing the output file...  [0.001s]
Closing the database file...  [0s]
Deallocating taxonomy...  [0s]
Total time = 6.023s
Reported 200 pairwise alignments, 200 HSPs.
12 queries aligned.


                    

                                                                      

                      

                        

                          
jbrowse.log

                        

                        
                      

                      

                      
Added track "MOSGA" to /opt/mosga/snakemake/../gui/uploads/dd02ad62/jbrowse/config.json


                    

                                                                      

                      

                        

                          
genome_chopping.log

                        

                        
                      

                      

                      
1.7 Mbp
3.3 Mbp
4.8 Mbp
6.4 Mbp
7.8 Mbp
9.1 Mbp
10.4 Mbp
11.7 Mbp
12.9 Mbp
14.1 Mbp
15.2 Mbp
16.3 Mbp
17.4 Mbp
18.3 Mbp
19.2 Mbp
20.2 Mbp
21.0 Mbp
21.9 Mbp
22.7 Mbp
23.5 Mbp
24.2 Mbp
24.9 Mbp
25.5 Mbp
26.1 Mbp
26.7 Mbp
27.3 Mbp
27.8 Mbp
28.3 Mbp
28.7 Mbp
29.1 Mbp
29.1 Mbp
29.3 Mbp


                    

                                                                      

                      

                        

                          
busco.log

                        

                        
                      

                      

                      
Source: eukaryota_odb10
  Value Percentage                Category
0   146      57.25  Complete (single-copy)
1     1       0.39   Complete (duplicated)
2    30      11.76              Fragmented
3    78      30.59                 Missing


                    

                                                                      

                      

                        

                          
barrnap.log