raxml_likelyhood.log

Warning, you specified a working directory via "-w"
Keep in mind that RAxML only accepts absolute path names, not relative ones!

This is the RAxML Master Pthread

This is RAxML Worker Pthread Number: 1

This is RAxML Worker Pthread Number: 2

This is RAxML Worker Pthread Number: 4

This is RAxML Worker Pthread Number: 3

This is RAxML Worker Pthread Number: 5

This is RAxML Worker Pthread Number: 6


This is RAxML version 8.2.12 released by Alexandros Stamatakis on May 2018.

With greatly appreciated code contributions by:
Andre Aberer      (HITS)
Simon Berger      (HITS)
Alexey Kozlov     (HITS)
Kassian Kobert    (HITS)
David Dao         (KIT and HITS)
Sarah Lutteropp   (KIT and HITS)
Nick Pattengale   (Sandia)
Wayne Pfeiffer    (SDSC)
Akifumi S. Tanabe (NRIFS)
Charlie Taylor    (UF)


Alignment has 5318 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 1.70%

RAxML rapid hill-climbing mode

Using 1 distinct models/data partitions with joint branch length optimization


Executing 1 inferences on the original alignment using 1 distinct randomized MP trees

All free model parameters will be estimated by RAxML
GAMMA model of rate heterogeneity, ML estimate of alpha-parameter

GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Alignment Patterns: 5318
Name: No Name Provided
DataType: AA
Substitution Matrix: AUTO
Using fixed base frequencies




RAxML was called as follows:

/opt/mosga/tools/RAxML/raxmlHPC-PTHREADS-AVX -T 7 -m PROTGAMMAAUTO -s /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/trimal/genes.clean.ph -o 6068982903 -n tree-ml -w /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/maximum_likelihood/ -p 31415926535 


Partition: 0 with name: No Name Provided
Base frequencies: 0.087 0.044 0.039 0.057 0.019 0.037 0.058 0.083 0.024 0.048 0.086 0.062 0.020 0.038 0.046 0.070 0.061 0.014 0.035 0.071 

Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -315219.400962 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -314030.010727 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -314029.998142 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -314029.998126 with empirical base frequencies


Inference[0]: Time 30.760840 GAMMA-based likelihood -314029.998126, best rearrangement setting 4


Conducting final model optimizations on all 1 trees under GAMMA-based models ....

Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -314029.998126 with empirical base frequencies


Inference[0] final GAMMA-based Likelihood: -314029.998126 tree written to file /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/maximum_likelihood/RAxML_result.tree-ml


Starting final GAMMA-based thorough Optimization on tree 0 likelihood -314029.998126 .... 

Final GAMMA-based Score of best tree -314029.998126

Program execution info written to /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/maximum_likelihood/RAxML_info.tree-ml
Best-scoring ML tree written to: /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/maximum_likelihood/RAxML_bestTree.tree-ml

Overall execution time: 39.128516 secs or 0.010869 hours or 0.000453 days

raxml_bootstrapping.log

Warning, you specified a working directory via "-w"
Keep in mind that RAxML only accepts absolute path names, not relative ones!

This is the RAxML Master Pthread

This is RAxML Worker Pthread Number: 1

This is RAxML Worker Pthread Number: 2

This is RAxML Worker Pthread Number: 3

This is RAxML Worker Pthread Number: 4

This is RAxML Worker Pthread Number: 5

This is RAxML Worker Pthread Number: 6


This is RAxML version 8.2.12 released by Alexandros Stamatakis on May 2018.

With greatly appreciated code contributions by:
Andre Aberer      (HITS)
Simon Berger      (HITS)
Alexey Kozlov     (HITS)
Kassian Kobert    (HITS)
David Dao         (KIT and HITS)
Sarah Lutteropp   (KIT and HITS)
Nick Pattengale   (Sandia)
Wayne Pfeiffer    (SDSC)
Akifumi S. Tanabe (NRIFS)
Charlie Taylor    (UF)


Alignment has 5318 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 1.70%

RAxML rapid hill-climbing mode

Using 1 distinct models/data partitions with joint branch length optimization


Executing 5 non-parametric bootstrap inferences

All free model parameters will be estimated by RAxML
GAMMA model of rate heterogeneity, ML estimate of alpha-parameter

GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Alignment Patterns: 5318
Name: No Name Provided
DataType: AA
Substitution Matrix: AUTO
Using fixed base frequencies




RAxML was called as follows:

/opt/mosga/tools/RAxML/raxmlHPC-PTHREADS-AVX -f d -T 7 -m PROTGAMMAAUTO -s /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/trimal/genes.clean.ph -o 6068982903 -n tree-bo -w /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/bootstrapping/ -# 5 -p 31415926535 -b 31415926535 


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -315081.038594 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: HIVB likelihood -313874.489721 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: HIVB likelihood -313869.893311 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: HIVB likelihood -313869.887390 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: HIVB likelihood -313869.887387 with empirical base frequencies


Bootstrap[0]: Time 26.813206 seconds, bootstrap likelihood -313869.887387, best rearrangement setting 4
Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -315777.345097 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -314545.344011 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -314545.329162 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -314545.329140 with empirical base frequencies


Bootstrap[1]: Time 17.598018 seconds, bootstrap likelihood -314545.329140, best rearrangement setting 4
Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -314802.768484 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: HIVB likelihood -313516.948387 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: HIVB likelihood -313513.331856 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: HIVB likelihood -313513.325476 with empirical base frequencies


Bootstrap[2]: Time 11.670739 seconds, bootstrap likelihood -313513.325464, best rearrangement setting 4
Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -316151.999776 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: HIVB likelihood -314860.146789 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: HIVB likelihood -314856.604486 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: HIVB likelihood -314856.598362 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: HIVB likelihood -314856.598344 with empirical base frequencies


Bootstrap[3]: Time 14.287773 seconds, bootstrap likelihood -314856.598344, best rearrangement setting 4
Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -315158.306541 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -313985.478174 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -313985.467765 with empirical base frequencies


Automatic protein model assignment algorithm using ML criterion:

	Partition: 0 best-scoring AA model: JTT likelihood -313985.467752 with empirical base frequencies


Bootstrap[4]: Time 11.650536 seconds, bootstrap likelihood -313985.467752, best rearrangement setting 4


Overall Time for 5 Bootstraps 82.056833


Average Time per Bootstrap 16.411367
All 5 bootstrapped trees written to: /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/bootstrapping/RAxML_bootstrap.tree-bo
raxml.log

Warning, you specified a working directory via "-w"
Keep in mind that RAxML only accepts absolute path names, not relative ones!
Found a total of 7 taxa in first tree of tree collection /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/bootstrapping/RAxML_bootstrap.tree-bo
Expecting all remaining trees in collection to have the same taxon set
add [1c00b031cd]
add [be272580eb]
add [f5c6fe3e1b]
add [a5559a11b7]
add [18c62eb443]
add [99263d098b]
add [6068982903]


WARNING: RAxML is not checking sequences for duplicate seqs and sites with missing data!


This is the RAxML Master Pthread

This is RAxML Worker Pthread Number: 1

This is RAxML Worker Pthread Number: 2

This is RAxML Worker Pthread Number: 3

This is RAxML Worker Pthread Number: 5

This is RAxML Worker Pthread Number: 4

This is RAxML Worker Pthread Number: 6

This is RAxML Worker Pthread Number: 7

This is RAxML Worker Pthread Number: 8

This is RAxML Worker Pthread Number: 9

This is RAxML Worker Pthread Number: 11

This is RAxML Worker Pthread Number: 12

This is RAxML Worker Pthread Number: 13

This is RAxML Worker Pthread Number: 10


This is RAxML version 8.2.12 released by Alexandros Stamatakis on May 2018.

With greatly appreciated code contributions by:
Andre Aberer      (HITS)
Simon Berger      (HITS)
Alexey Kozlov     (HITS)
Kassian Kobert    (HITS)
David Dao         (KIT and HITS)
Sarah Lutteropp   (KIT and HITS)
Nick Pattengale   (Sandia)
Wayne Pfeiffer    (SDSC)
Akifumi S. Tanabe (NRIFS)
Charlie Taylor    (UF)


RAxML Bipartition Computation: Drawing support values from trees in file /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/bootstrapping/RAxML_bootstrap.tree-bo onto tree in file /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/maximum_likelihood/RAxML_bestTree.tree-ml


RAxML was called as follows:

/opt/mosga/tools/RAxML/raxmlHPC-PTHREADS-AVX -f b -T 14 -m GTRCAT -z /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/bootstrapping/RAxML_bootstrap.tree-bo -t /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/maximum_likelihood/RAxML_bestTree.tree-ml -n tree -o 6068982903 -w /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/ 




Found 1 tree in File /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/maximum_likelihood/RAxML_bestTree.tree-ml



Found 5 trees in File /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/bootstrapping/RAxML_bootstrap.tree-bo



Found 1 tree in File /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/maximum_likelihood/RAxML_bestTree.tree-ml



Time for Computation of Bipartitions 0.004746
Tree with bipartitions written to file:  /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/RAxML_bipartitions.tree
Tree with bipartitions as branch labels written to file:  /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/RAxML_bipartitionsBranchLabels.tree
Execution information file written to :  /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/phylogenetic/raxml/RAxML_info.tree
phylogenetic_tree.log

Registered S3 method overwritten by 'treeio':
  method     from
  root.phylo ape 
ggtree v2.0.4  For help: https://yulab-smu.github.io/treedata-book/

If you use ggtree in published research, please cite the most appropriate paper(s):

- Guangchuang Yu, Tommy Tsan-Yuk Lam, Huachen Zhu, Yi Guan. Two methods for mapping and visualizing associated data on phylogeny using ggtree. Molecular Biology and Evolution 2018, 35(12):3041-3043. doi: 10.1093/molbev/msy194
- Guangchuang Yu, David Smith, Huachen Zhu, Yi Guan, Tommy Tsan-Yuk Lam. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution 2017, 8(1):28-36, doi:10.1111/2041-210X.12628



Attaching package: ‘ggtree’

The following object is masked from ‘package:ape’:

    rotate

Warning message:
Ignoring unknown parameters: as_ylab 
Warning messages:
1: In FUN(X[[i]], ...) : NAs introduced by coercion
2: In FUN(X[[i]], ...) : NAs introduced by coercion
fastani.log

>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 973887
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 908818
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 883362) ... (161, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 1.0092 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 3.3954 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.0037648 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 929246
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 905531
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 888901) ... (61, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.948755 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.16319 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00334388 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 948492
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 909430
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 888821) ... (88, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.959731 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.06424 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.0037076 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 914744
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 876707
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 856011) ... (144, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.806109 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.79403 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00282222 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 965340
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 910505
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 886610) ... (147, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.847254 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.40796 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00353373 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 923960
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 900416
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 882630) ... (69, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.941609 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.9597 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00343834 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 911769
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 892037
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 879168) ... (88, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.943571 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 3.15624 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00380299 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 929246
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 905531
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 888901) ... (61, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.961735 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.68832 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00292166 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 948492
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 909430
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 888821) ... (88, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.99085 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.27333 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00358013 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 914744
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 876707
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 856011) ... (144, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.938442 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.30305 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00358861 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 965340
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 910505
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 886610) ... (147, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.843749 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 3.95664 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.0047122 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 923960
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 900416
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 882630) ... (69, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.884782 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.70076 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00305702 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 911769
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 892037
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 879168) ... (88, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.939313 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.14708 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00342726 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 973887
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 908818
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 883362) ... (161, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.974338 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.73556 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00349759 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 948492
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 909430
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 888821) ... (88, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.988434 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.86461 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00330088 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 914744
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 876707
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 856011) ... (144, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.959714 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.37462 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00244316 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 965340
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 910505
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 886610) ... (147, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.976257 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.84766 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00318709 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 923960
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 900416
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 882630) ... (69, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.964555 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.50552 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00426939 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 911769
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 892037
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 879168) ... (88, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.950723 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.98727 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00369721 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 973887
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 908818
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 883362) ... (161, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.854474 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.49521 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00371866 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 929246
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 905531
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 888901) ... (61, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.821337 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.80166 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00336205 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 914744
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 876707
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 856011) ... (144, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.804754 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.49946 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00291158 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 965340
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 910505
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 886610) ... (147, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.981452 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.09468 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00418981 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 923960
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 900416
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 882630) ... (69, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.823581 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.79909 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.0032915 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 911769
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 892037
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 879168) ... (88, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.93045 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.74328 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00291009 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 973887
INFO [thread 0], skch::Sketch::index, unique minimizers = 908818
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 883362) ... (161, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.942612 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.34031 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00340571 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 929246
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 905531
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 888901) ... (61, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.905959 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.27983 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00247201 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 948492
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 909430
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 888821) ... (88, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.919036 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.39671 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00284948 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 965340
INFO [thread 0], skch::Sketch::index, unique minimizers = 910505
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 886610) ... (147, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.954447 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.68851 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00333849 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 923960
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 900416
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 882630) ... (69, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.908345 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.23101 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00246954 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 911769
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 892037
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 879168) ... (88, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.967108 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.27431 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00364471 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 973887
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 908818
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 883362) ... (161, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.866564 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 4.11115 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00477116 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 929246
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 905531
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 888901) ... (61, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.957519 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.78978 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00325799 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 948492
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 909430
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 888821) ... (88, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.956442 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.11874 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00369212 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 914744
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 876707
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 856011) ... (144, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.830051 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.75889 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00332753 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 923960
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 900416
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 882630) ... (69, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.969651 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.72413 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00318801 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 911769
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 892037
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 879168) ... (88, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.8215 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.89554 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00348419 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 973887
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 908818
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 883362) ... (161, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.84119 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.73227 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00319877 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 929246
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 905531
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 888901) ... (61, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.850304 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 2.50971 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00429146 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 948492
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 909430
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 888821) ... (88, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.901876 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.85492 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00346809 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 914744
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 876707
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 856011) ... (144, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.92896 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.33448 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00255469 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
>>>>>>>>>>>>>>>>>>
Reference = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001]
Query = [/opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e]
Kmer size = 16
Fragment length = 3000
Threads = 14
ANI output file = /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/ani/temp.ani
>>>>>>>>>>>>>>>>>>
INFO [thread 0], skch::main, Count of threads executing parallel_for : 14
INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
INFO [thread 7], skch::main, ready to exit the loop
INFO [thread 5], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 965340
INFO [thread 10], skch::main, ready to exit the loop
INFO [thread 13], skch::main, ready to exit the loop
INFO [thread 4], skch::main, ready to exit the loop
INFO [thread 8], skch::main, ready to exit the loop
INFO [thread 1], skch::main, ready to exit the loop
INFO [thread 9], skch::main, ready to exit the loop
INFO [thread 6], skch::main, ready to exit the loop
INFO [thread 2], skch::main, ready to exit the loop
INFO [thread 12], skch::main, ready to exit the loop
INFO [thread 3], skch::main, ready to exit the loop
INFO [thread 11], skch::main, ready to exit the loop
INFO [thread 0], skch::Sketch::index, unique minimizers = 910505
INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 886610) ... (147, 1)
INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
INFO [thread 0], skch::main, Time spent sketching the reference : 0.967918 sec
INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.76244 sec
INFO [thread 0], skch::main, Time spent post mapping : 0.00371203 sec
INFO [thread 0], skch::main, ready to exit the loop
INFO, skch::main, parallel_for execution finished
eukcc_f5c6fe3e1b62073d99445f9c.log

/usr/bin:/bin
07/06/2021 13:00:51:  Starting EukCC
07/06/2021 13:00:51:  Running GeneMark-ES
07/06/2021 13:08:49:  Extracting protein locations
07/06/2021 13:08:49:  Searching for proteins to place in the tree
07/06/2021 13:08:52:  Processing Hmmer results
07/06/2021 13:08:56:  Placing proteins in tree
07/06/2021 13:13:44:  MAG succesfully placed in tree
07/06/2021 13:13:44:  572 hmm profiles need to be used for estimations
07/06/2021 13:13:44:  Concatenating hmms, this might take a while (IO limited)
07/06/2021 13:13:44:  Pressing hmms
07/06/2021 13:13:46:  Running hmmer for chosen locations
07/06/2021 13:14:30:  Processing Hmmer results
07/06/2021 13:14:30:  Estimating scores now
07/06/2021 13:14:30:  Finished estimating
07/06/2021 13:14:30:  Wrote estimates to: /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/eukcc/f5c6fe3e1b62073d99445f9c/eukcc.tsv
eukcc_be272580eb9891f4e5f02bd3.log

/usr/bin:/bin
07/06/2021 11:47:34:  Starting EukCC
07/06/2021 11:47:34:  Running GeneMark-ES
07/06/2021 11:50:52:  Extracting protein locations
07/06/2021 11:50:52:  Searching for proteins to place in the tree
07/06/2021 11:50:56:  Processing Hmmer results
07/06/2021 11:51:00:  Placing proteins in tree
07/06/2021 11:55:53:  MAG succesfully placed in tree
07/06/2021 11:55:53:  1701 hmm profiles need to be used for estimations
07/06/2021 11:55:53:  Concatenating hmms, this might take a while (IO limited)
07/06/2021 11:55:53:  Pressing hmms
07/06/2021 11:55:58:  Running hmmer for chosen locations
07/06/2021 11:58:10:  Processing Hmmer results
07/06/2021 11:58:10:  Estimating scores now
07/06/2021 11:58:10:  Finished estimating
07/06/2021 11:58:10:  Wrote estimates to: /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/eukcc/be272580eb9891f4e5f02bd3/eukcc.tsv
eukcc_a5559a11b76e89eb5e819001.log

/usr/bin:/bin
07/06/2021 11:38:02:  Starting EukCC
07/06/2021 11:38:02:  Running GeneMark-ES
07/06/2021 11:41:25:  Extracting protein locations
07/06/2021 11:41:25:  Searching for proteins to place in the tree
07/06/2021 11:41:29:  Processing Hmmer results
07/06/2021 11:41:33:  Placing proteins in tree
07/06/2021 11:46:33:  MAG succesfully placed in tree
07/06/2021 11:46:33:  541 hmm profiles need to be used for estimations
07/06/2021 11:46:33:  Concatenating hmms, this might take a while (IO limited)
07/06/2021 11:46:33:  Pressing hmms
07/06/2021 11:46:35:  Running hmmer for chosen locations
07/06/2021 11:47:25:  Processing Hmmer results
07/06/2021 11:47:25:  Estimating scores now
07/06/2021 11:47:25:  Finished estimating
07/06/2021 11:47:25:  Wrote estimates to: /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/eukcc/a5559a11b76e89eb5e819001/eukcc.tsv
eukcc_99263d098be68af7a2289f00.log

/usr/bin:/bin
07/06/2021 12:06:09:  Starting EukCC
07/06/2021 12:06:09:  Running GeneMark-ES
NAC
NGA
GNT
ACN
GAN
CGN
ATN
CNA
NAA
TTN
NTT
NCG
07/06/2021 12:09:03:  Extracting protein locations
07/06/2021 12:09:03:  Searching for proteins to place in the tree
07/06/2021 12:09:06:  Processing Hmmer results
07/06/2021 12:09:10:  Placing proteins in tree
07/06/2021 12:14:30:  MAG succesfully placed in tree
07/06/2021 12:14:30:  736 hmm profiles need to be used for estimations
07/06/2021 12:14:30:  Concatenating hmms, this might take a while (IO limited)
07/06/2021 12:14:30:  Pressing hmms
07/06/2021 12:14:32:  Running hmmer for chosen locations
07/06/2021 12:15:41:  Processing Hmmer results
07/06/2021 12:15:42:  Estimating scores now
07/06/2021 12:15:42:  Finished estimating
07/06/2021 12:15:42:  Wrote estimates to: /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/eukcc/99263d098be68af7a2289f00/eukcc.tsv
eukcc_606898290326c6c79d936d7e.log

/usr/bin:/bin
07/06/2021 12:24:30:  Starting EukCC
07/06/2021 12:24:30:  Running GeneMark-ES
NNN
NTN
TGN
TNT
NNA
NAA
NNT
ANN
NAN
NAC
GAN
NNG
ATN
NNC
NGN
AAN
NAT
07/06/2021 12:27:16:  Extracting protein locations
07/06/2021 12:27:16:  Searching for proteins to place in the tree
07/06/2021 12:27:20:  Processing Hmmer results
07/06/2021 12:27:24:  Placing proteins in tree
07/06/2021 12:32:28:  MAG succesfully placed in tree
07/06/2021 12:32:28:  1993 hmm profiles need to be used for estimations
07/06/2021 12:32:28:  Concatenating hmms, this might take a while (IO limited)
07/06/2021 12:32:29:  Pressing hmms
07/06/2021 12:32:36:  Running hmmer for chosen locations
07/06/2021 12:35:06:  Processing Hmmer results
07/06/2021 12:35:06:  Estimating scores now
07/06/2021 12:35:07:  Finished estimating
07/06/2021 12:35:07:  Wrote estimates to: /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/eukcc/606898290326c6c79d936d7e/eukcc.tsv
eukcc_1c00b031cdeac5a93e17d8e8.log

/usr/bin:/bin
07/06/2021 12:51:32:  Starting EukCC
07/06/2021 12:51:32:  Running GeneMark-ES
07/06/2021 12:54:30:  Extracting protein locations
07/06/2021 12:54:30:  Searching for proteins to place in the tree
07/06/2021 12:54:33:  Processing Hmmer results
07/06/2021 12:54:37:  Placing proteins in tree
07/06/2021 12:59:37:  MAG succesfully placed in tree
07/06/2021 12:59:37:  594 hmm profiles need to be used for estimations
07/06/2021 12:59:37:  Concatenating hmms, this might take a while (IO limited)
07/06/2021 12:59:37:  Pressing hmms
07/06/2021 12:59:40:  Running hmmer for chosen locations
07/06/2021 13:00:40:  Processing Hmmer results
07/06/2021 13:00:40:  Estimating scores now
07/06/2021 13:00:40:  Finished estimating
07/06/2021 13:00:40:  Wrote estimates to: /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/eukcc/1c00b031cdeac5a93e17d8e8/eukcc.tsv
eukcc_18c62eb443972a0e6c96bf5d.log

07/06/2021 10:49:51:  Starting EukCC
07/06/2021 10:49:51:  Running GeneMark-ES
07/06/2021 10:53:32:  Extracting protein locations
07/06/2021 10:53:32:  Searching for proteins to place in the tree
07/06/2021 10:53:36:  Processing Hmmer results
07/06/2021 10:53:40:  Placing proteins in tree
07/06/2021 10:59:22:  MAG succesfully placed in tree
07/06/2021 10:59:22:  1701 hmm profiles need to be used for estimations
07/06/2021 10:59:22:  Concatenating hmms, this might take a while (IO limited)
07/06/2021 10:59:24:  Pressing hmms
07/06/2021 10:59:29:  Running hmmer for chosen locations
07/06/2021 11:02:03:  Processing Hmmer results
Loading node names...
2343401 names loaded.
249136 synonyms loaded.
Loading nodes...
2343401 nodes loaded.
Linking nodes...
Tree is loaded.
Updating database: /home/mosga/.etetoolkit/taxa.sqlite ...

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 1992000 generating entries... 
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 2330000 generating entries... 
 2331000 NCBI database not present yet (first time used?)
Downloading taxdump.tar.gz from NCBI FTP site (via HTTP)...
Done. Parsing...

Inserting synonyms:          0 
Inserting synonyms:       5000 
Inserting synonyms:      10000 
Inserting synonyms:      15000 
Inserting synonyms:      20000 
Inserting synonyms:      25000 
Inserting synonyms:      30000 
Inserting synonyms:      35000 
Inserting synonyms:      40000 
Inserting synonyms:      45000 
Inserting synonyms:      50000 
Inserting synonyms:      55000 
Inserting synonyms:      60000 
Inserting synonyms:      65000 
Inserting synonyms:      70000 
Inserting synonyms:      75000 
Inserting synonyms:      80000 
Inserting synonyms:      85000 
Inserting synonyms:      90000 
Inserting synonyms:      95000 
Inserting synonyms:      100000 
Inserting synonyms:      105000 
Inserting synonyms:      110000 
Inserting synonyms:      115000 
Inserting synonyms:      120000 
Inserting synonyms:      125000 
Inserting synonyms:      130000 
Inserting synonyms:      135000 
Inserting synonyms:      140000 
Inserting synonyms:      145000 
Inserting synonyms:      150000 
Inserting synonyms:      155000 
Inserting synonyms:      160000 
Inserting synonyms:      165000 
Inserting synonyms:      170000 
Inserting synonyms:      175000 
Inserting synonyms:      180000 
Inserting synonyms:      185000 
Inserting synonyms:      190000 
Inserting synonyms:      195000 
Inserting synonyms:      200000 
Inserting synonyms:      205000 
Inserting synonyms:      210000 
Inserting synonyms:      215000 
Inserting synonyms:      220000 
Inserting synonyms:      225000 
Inserting synonyms:      230000 
Inserting synonyms:      235000 
Inserting synonyms:      240000 
Inserting synonyms:      245000 
Inserting taxid merges:      0 
Inserting taxid merges:   5000 
Inserting taxid merges:  10000 
Inserting taxid merges:  15000 
Inserting taxid merges:  20000 
Inserting taxid merges:  25000 
Inserting taxid merges:  30000 
Inserting taxid merges:  35000 
Inserting taxid merges:  40000 
Inserting taxid merges:  45000 
Inserting taxid merges:  50000 
Inserting taxid merges:  55000 
Inserting taxid merges:  60000 
Inserting taxids:           0 
Inserting taxids:        5000 
Inserting taxids:       10000 
Inserting taxids:       15000 
Inserting taxids:       20000 
Inserting taxids:       25000 
Inserting taxids:       30000 
Inserting taxids:       35000 
Inserting taxids:       40000 
Inserting taxids:       45000 
Inserting taxids:       50000 
Inserting taxids:       55000 
Inserting taxids:       60000 
Inserting taxids:       65000 
Inserting taxids:       70000 
Inserting taxids:       75000 
Inserting taxids:       80000 
Inserting taxids:       85000 
Inserting taxids:       90000 
Inserting taxids:       95000 
Inserting taxids:       100000 
Inserting taxids:       105000 
Inserting taxids:       110000 
Inserting taxids:       115000 
Inserting taxids:       120000 
Inserting taxids:       125000 
Inserting taxids:       130000 
Inserting taxids:       135000 
Inserting taxids:       140000 
Inserting taxids:       145000 
Inserting taxids:       150000 
Inserting taxids:       155000 
Inserting taxids:       160000 
Inserting taxids:       165000 
Inserting taxids:       170000 
Inserting taxids:       175000 
Inserting taxids:       180000 
Inserting taxids:       185000 
Inserting taxids:       190000 
Inserting taxids:       195000 
Inserting taxids:       200000 
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Inserting taxids:       210000 
Inserting taxids:       215000 
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Inserting taxids:       225000 
Inserting taxids:       230000 
Inserting taxids:       235000 
Inserting taxids:       240000 
Inserting taxids:       245000 
Inserting taxids:       250000 
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Inserting taxids:       265000 
Inserting taxids:       270000 
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Inserting taxids:       280000 
Inserting taxids:       285000 
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Inserting taxids:       310000 
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Inserting taxids:       320000 
Inserting taxids:       325000 
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Inserting taxids:       335000 
Inserting taxids:       340000 
Inserting taxids:       345000 
Inserting taxids:       350000 
Inserting taxids:       355000 
Inserting taxids:       360000 
Inserting taxids:       365000 
Inserting taxids:       370000 
Inserting taxids:       375000 
Inserting taxids:       380000 
Inserting taxids:       385000 
Inserting taxids:       390000 
Inserting taxids:       395000 
Inserting taxids:       400000 
Inserting taxids:       405000 
Inserting taxids:       410000 
Inserting taxids:       415000 
Inserting taxids:       420000 
Inserting taxids:       425000 
Inserting taxids:       430000 
Inserting taxids:       435000 
Inserting taxids:       440000 
Inserting taxids:       445000 
Inserting taxids:       450000 
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Inserting taxids:       540000 
Inserting taxids:       545000 
Inserting taxids:       550000 
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Inserting taxids:       590000 
Inserting taxids:       595000 
Inserting taxids:       600000 
Inserting taxids:       605000 
Inserting taxids:       610000 
Inserting taxids:       615000 
Inserting taxids:       620000 
Inserting taxids:       625000 
Inserting taxids:       630000 
Inserting taxids:       635000 
Inserting taxids:       640000 
Inserting taxids:       645000 
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Inserting taxids:       660000 
Inserting taxids:       665000 
Inserting taxids:       670000 
Inserting taxids:       675000 
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Inserting taxids:       690000 
Inserting taxids:       695000 
Inserting taxids:       700000 
Inserting taxids:       705000 
Inserting taxids:       710000 
Inserting taxids:       715000 
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Inserting taxids:       730000 
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Inserting taxids:       760000 
Inserting taxids:       765000 
Inserting taxids:       770000 
Inserting taxids:       775000 
Inserting taxids:       780000 
Inserting taxids:       785000 
Inserting taxids:       790000 
Inserting taxids:       795000 
Inserting taxids:       800000 
Inserting taxids:       805000 
Inserting taxids:       810000 
Inserting taxids:       815000 
Inserting taxids:       820000 
Inserting taxids:       825000 
Inserting taxids:       830000 
Inserting taxids:       835000 
Inserting taxids:       840000 
Inserting taxids:       845000 
Inserting taxids:       850000 
Inserting taxids:       855000 
Inserting taxids:       860000 
Inserting taxids:       865000 
Inserting taxids:       870000 
Inserting taxids:       875000 
Inserting taxids:       880000 
Inserting taxids:       885000 
Inserting taxids:       890000 
Inserting taxids:       895000 
Inserting taxids:       900000 
Inserting taxids:       905000 
Inserting taxids:       910000 
Inserting taxids:       915000 
Inserting taxids:       920000 
Inserting taxids:       925000 
Inserting taxids:       930000 
Inserting taxids:       935000 
Inserting taxids:       940000 
Inserting taxids:       945000 
Inserting taxids:       950000 
Inserting taxids:       955000 
Inserting taxids:       960000 
Inserting taxids:       965000 
Inserting taxids:       970000 
Inserting taxids:       975000 
Inserting taxids:       980000 
Inserting taxids:       985000 
Inserting taxids:       990000 
Inserting taxids:       995000 
Inserting taxids:       1000000 
Inserting taxids:       1005000 
Inserting taxids:       1010000 
Inserting taxids:       1015000 
Inserting taxids:       1020000 
Inserting taxids:       1025000 
Inserting taxids:       1030000 
Inserting taxids:       1035000 
Inserting taxids:       1040000 
Inserting taxids:       1045000 
Inserting taxids:       1050000 
Inserting taxids:       1055000 
Inserting taxids:       1060000 
Inserting taxids:       1065000 
Inserting taxids:       1070000 
Inserting taxids:       1075000 
Inserting taxids:       1080000 
Inserting taxids:       1085000 
Inserting taxids:       1090000 
Inserting taxids:       1095000 
Inserting taxids:       1100000 
Inserting taxids:       1105000 
Inserting taxids:       1110000 
Inserting taxids:       1115000 
Inserting taxids:       1120000 
Inserting taxids:       1125000 
Inserting taxids:       1130000 
Inserting taxids:       1135000 
Inserting taxids:       1140000 
Inserting taxids:       1145000 
Inserting taxids:       1150000 
Inserting taxids:       1155000 
Inserting taxids:       1160000 
Inserting taxids:       1165000 
Inserting taxids:       1170000 
Inserting taxids:       1175000 
Inserting taxids:       1180000 
Inserting taxids:       1185000 
Inserting taxids:       1190000 
Inserting taxids:       1195000 
Inserting taxids:       1200000 
Inserting taxids:       1205000 
Inserting taxids:       1210000 
Inserting taxids:       1215000 
Inserting taxids:       1220000 
Inserting taxids:       1225000 
Inserting taxids:       1230000 
Inserting taxids:       1235000 
Inserting taxids:       1240000 
Inserting taxids:       1245000 
Inserting taxids:       1250000 
Inserting taxids:       1255000 
Inserting taxids:       1260000 
Inserting taxids:       1265000 
Inserting taxids:       1270000 
Inserting taxids:       1275000 
Inserting taxids:       1280000 
Inserting taxids:       1285000 
Inserting taxids:       1290000 
Inserting taxids:       1295000 
Inserting taxids:       1300000 
Inserting taxids:       1305000 
Inserting taxids:       1310000 
Inserting taxids:       1315000 
Inserting taxids:       1320000 
Inserting taxids:       1325000 
Inserting taxids:       1330000 
Inserting taxids:       1335000 
Inserting taxids:       1340000 
Inserting taxids:       1345000 
Inserting taxids:       1350000 
Inserting taxids:       1355000 
Inserting taxids:       1360000 
Inserting taxids:       1365000 
Inserting taxids:       1370000 
Inserting taxids:       1375000 
Inserting taxids:       1380000 
Inserting taxids:       1385000 
Inserting taxids:       1390000 
Inserting taxids:       1395000 
Inserting taxids:       1400000 
Inserting taxids:       1405000 
Inserting taxids:       1410000 
Inserting taxids:       1415000 
Inserting taxids:       1420000 
Inserting taxids:       1425000 
Inserting taxids:       1430000 
Inserting taxids:       1435000 
Inserting taxids:       1440000 
Inserting taxids:       1445000 
Inserting taxids:       1450000 
Inserting taxids:       1455000 
Inserting taxids:       1460000 
Inserting taxids:       1465000 
Inserting taxids:       1470000 
Inserting taxids:       1475000 
Inserting taxids:       1480000 
Inserting taxids:       1485000 
Inserting taxids:       1490000 
Inserting taxids:       1495000 
Inserting taxids:       1500000 
Inserting taxids:       1505000 
Inserting taxids:       1510000 
Inserting taxids:       1515000 
Inserting taxids:       1520000 
Inserting taxids:       1525000 
Inserting taxids:       1530000 
Inserting taxids:       1535000 
Inserting taxids:       1540000 
Inserting taxids:       1545000 
Inserting taxids:       1550000 
Inserting taxids:       1555000 
Inserting taxids:       1560000 
Inserting taxids:       1565000 
Inserting taxids:       1570000 
Inserting taxids:       1575000 
Inserting taxids:       1580000 
Inserting taxids:       1585000 
Inserting taxids:       1590000 
Inserting taxids:       1595000 
Inserting taxids:       1600000 
Inserting taxids:       1605000 
Inserting taxids:       1610000 
Inserting taxids:       1615000 
Inserting taxids:       1620000 
Inserting taxids:       1625000 
Inserting taxids:       1630000 
Inserting taxids:       1635000 
Inserting taxids:       1640000 
Inserting taxids:       1645000 
Inserting taxids:       1650000 
Inserting taxids:       1655000 
Inserting taxids:       1660000 
Inserting taxids:       1665000 
Inserting taxids:       1670000 
Inserting taxids:       1675000 
Inserting taxids:       1680000 
Inserting taxids:       1685000 
Inserting taxids:       1690000 
Inserting taxids:       1695000 
Inserting taxids:       1700000 
Inserting taxids:       1705000 
Inserting taxids:       1710000 
Inserting taxids:       1715000 
Inserting taxids:       1720000 
Inserting taxids:       1725000 
Inserting taxids:       1730000 
Inserting taxids:       1735000 
Inserting taxids:       1740000 
Inserting taxids:       1745000 
Inserting taxids:       1750000 
Inserting taxids:       1755000 
Inserting taxids:       1760000 
Inserting taxids:       1765000 
Inserting taxids:       1770000 
Inserting taxids:       1775000 
Inserting taxids:       1780000 
Inserting taxids:       1785000 
Inserting taxids:       1790000 
Inserting taxids:       1795000 
Inserting taxids:       1800000 
Inserting taxids:       1805000 
Inserting taxids:       1810000 
Inserting taxids:       1815000 
Inserting taxids:       1820000 
Inserting taxids:       1825000 
Inserting taxids:       1830000 
Inserting taxids:       1835000 
Inserting taxids:       1840000 
Inserting taxids:       1845000 
Inserting taxids:       1850000 
Inserting taxids:       1855000 
Inserting taxids:       1860000 
Inserting taxids:       1865000 
Inserting taxids:       1870000 
Inserting taxids:       1875000 
Inserting taxids:       1880000 
Inserting taxids:       1885000 
Inserting taxids:       1890000 
Inserting taxids:       1895000 
Inserting taxids:       1900000 
Inserting taxids:       1905000 
Inserting taxids:       1910000 
Inserting taxids:       1915000 
Inserting taxids:       1920000 
Inserting taxids:       1925000 
Inserting taxids:       1930000 
Inserting taxids:       1935000 
Inserting taxids:       1940000 
Inserting taxids:       1945000 
Inserting taxids:       1950000 
Inserting taxids:       1955000 
Inserting taxids:       1960000 
Inserting taxids:       1965000 
Inserting taxids:       1970000 
Inserting taxids:       1975000 
Inserting taxids:       1980000 
Inserting taxids:       1985000 
Inserting taxids:       1990000 
Inserting taxids:       1995000 
Inserting taxids:       2000000 
Inserting taxids:       2005000 
Inserting taxids:       2010000 
Inserting taxids:       2015000 
Inserting taxids:       2020000 
Inserting taxids:       2025000 
Inserting taxids:       2030000 
Inserting taxids:       2035000 
Inserting taxids:       2040000 
Inserting taxids:       2045000 
Inserting taxids:       2050000 
Inserting taxids:       2055000 
Inserting taxids:       2060000 
Inserting taxids:       2065000 
Inserting taxids:       2070000 
Inserting taxids:       2075000 
Inserting taxids:       2080000 
Inserting taxids:       2085000 
Inserting taxids:       2090000 
Inserting taxids:       2095000 
Inserting taxids:       2100000 
Inserting taxids:       2105000 
Inserting taxids:       2110000 
Inserting taxids:       2115000 
Inserting taxids:       2120000 
Inserting taxids:       2125000 
Inserting taxids:       2130000 
Inserting taxids:       2135000 
Inserting taxids:       2140000 
Inserting taxids:       2145000 
Inserting taxids:       2150000 
Inserting taxids:       2155000 
Inserting taxids:       2160000 
Inserting taxids:       2165000 
Inserting taxids:       2170000 
Inserting taxids:       2175000 
Inserting taxids:       2180000 
Inserting taxids:       2185000 
Inserting taxids:       2190000 
Inserting taxids:       2195000 
Inserting taxids:       2200000 
Inserting taxids:       2205000 
Inserting taxids:       2210000 
Inserting taxids:       2215000 
Inserting taxids:       2220000 
Inserting taxids:       2225000 
Inserting taxids:       2230000 
Inserting taxids:       2235000 
Inserting taxids:       2240000 
Inserting taxids:       2245000 
Inserting taxids:       2250000 
Inserting taxids:       2255000 
Inserting taxids:       2260000 
Inserting taxids:       2265000 
Inserting taxids:       2270000 
Inserting taxids:       2275000 
Inserting taxids:       2280000 
Inserting taxids:       2285000 
Inserting taxids:       2290000 
Inserting taxids:       2295000 
Inserting taxids:       2300000 
Inserting taxids:       2305000 
Inserting taxids:       2310000 
Inserting taxids:       2315000 
Inserting taxids:       2320000 
Inserting taxids:       2325000 
Inserting taxids:       2330000 
Inserting taxids:       2335000 
Inserting taxids:       2340000 07/06/2021 11:03:10:  Estimating scores now
07/06/2021 11:03:10:  Finished estimating
07/06/2021 11:03:10:  Wrote estimates to: /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/eukcc/18c62eb443972a0e6c96bf5d/eukcc.tsv
generating entries... 
 2332000 generating entries... 
 2333000 generating entries... 
 2334000 generating entries... 
 2335000 generating entries... 
 2336000 generating entries... 
 2337000 generating entries... 
 2338000 generating entries... 
 2339000 generating entries... 
 2340000 generating entries... 
 2341000 generating entries... 
 2342000 generating entries... 
 2343000 generating entries... 
Uploading to /home/mosga/.etetoolkit/taxa.sqlite




busco_f5c6fe3e1b62073d99445f9c.log

INFO:	***** Start a BUSCO v4.1.4 analysis, current time: 07/06/2021 13:14:39 *****
INFO:	Configuring BUSCO with /opt/mosga/scripts/busco_config.ini
INFO:	Mode is genome
INFO:	'Force' option selected; overwriting previous results directory
INFO:	Input file is /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/f5c6fe3e1b62073d99445f9c
INFO:	Downloading information on latest versions of BUSCO data...
WARNING:	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.
INFO:	Running BUSCO using lineage dataset eukaryota_odb10 (eukaryota, 2020-09-10)
INFO:	Running 1 job(s) on makeblastdb, starting at 07/06/2021 13:14:39
INFO:	Creating BLAST database with input file
INFO:	[makeblastdb]	1 of 1 task(s) completed
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 13:14:39
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using fly as species:
INFO:	Running 260 job(s) on augustus, starting at 07/06/2021 13:14:52
INFO:	[augustus]	26 of 260 task(s) completed
INFO:	[augustus]	52 of 260 task(s) completed
INFO:	[augustus]	78 of 260 task(s) completed
INFO:	[augustus]	104 of 260 task(s) completed
INFO:	[augustus]	130 of 260 task(s) completed
INFO:	[augustus]	156 of 260 task(s) completed
INFO:	[augustus]	182 of 260 task(s) completed
INFO:	[augustus]	208 of 260 task(s) completed
INFO:	[augustus]	234 of 260 task(s) completed
INFO:	[augustus]	260 of 260 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 194 job(s) on hmmsearch, starting at 07/06/2021 13:17:01
INFO:	[hmmsearch]	20 of 194 task(s) completed
INFO:	[hmmsearch]	20 of 194 task(s) completed
INFO:	[hmmsearch]	39 of 194 task(s) completed
INFO:	[hmmsearch]	59 of 194 task(s) completed
INFO:	[hmmsearch]	78 of 194 task(s) completed
INFO:	[hmmsearch]	97 of 194 task(s) completed
INFO:	[hmmsearch]	117 of 194 task(s) completed
INFO:	[hmmsearch]	136 of 194 task(s) completed
INFO:	[hmmsearch]	156 of 194 task(s) completed
INFO:	[hmmsearch]	175 of 194 task(s) completed
INFO:	[hmmsearch]	194 of 194 task(s) completed
INFO:	Starting second step of analysis. The gene predictor Augustus is retrained using the results from the initial run to yield more accurate results.
INFO:	Extracting missing and fragmented buscos from the file ancestral_variants...
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 13:17:02
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Converting predicted genes to short genbank files
INFO:	Running 130 job(s) on gff2gbSmallDNA.pl, starting at 07/06/2021 13:18:09
INFO:	[gff2gbSmallDNA.pl]	13 of 130 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	13 of 130 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	26 of 130 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	39 of 130 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	52 of 130 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	65 of 130 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	78 of 130 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	91 of 130 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	104 of 130 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	117 of 130 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	130 of 130 task(s) completed
INFO:	All files converted to short genbank files, now training Augustus using Single-Copy Complete BUSCOs
INFO:	Running 1 job(s) on new_species.pl, starting at 07/06/2021 13:18:10
INFO:	[new_species.pl]	1 of 1 task(s) completed
INFO:	Running 1 job(s) on etraining, starting at 07/06/2021 13:18:10
INFO:	[etraining]	1 of 1 task(s) completed
INFO:	Re-running Augustus with the new metaparameters, number of target BUSCOs: 125
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using BUSCO_f5c6fe3e1b62073d99445f9c as species:
INFO:	Running 145 job(s) on augustus, starting at 07/06/2021 13:18:11
INFO:	[augustus]	15 of 145 task(s) completed
INFO:	[augustus]	29 of 145 task(s) completed
INFO:	[augustus]	44 of 145 task(s) completed
INFO:	[augustus]	58 of 145 task(s) completed
INFO:	[augustus]	73 of 145 task(s) completed
INFO:	[augustus]	87 of 145 task(s) completed
INFO:	[augustus]	102 of 145 task(s) completed
INFO:	[augustus]	116 of 145 task(s) completed
INFO:	[augustus]	131 of 145 task(s) completed
INFO:	[augustus]	145 of 145 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 140 job(s) on hmmsearch, starting at 07/06/2021 13:19:02
INFO:	[hmmsearch]	14 of 140 task(s) completed
INFO:	[hmmsearch]	28 of 140 task(s) completed
INFO:	[hmmsearch]	42 of 140 task(s) completed
INFO:	[hmmsearch]	56 of 140 task(s) completed
INFO:	[hmmsearch]	70 of 140 task(s) completed
INFO:	[hmmsearch]	70 of 140 task(s) completed
INFO:	[hmmsearch]	84 of 140 task(s) completed
INFO:	[hmmsearch]	84 of 140 task(s) completed
INFO:	[hmmsearch]	98 of 140 task(s) completed
INFO:	[hmmsearch]	112 of 140 task(s) completed
INFO:	[hmmsearch]	126 of 140 task(s) completed
INFO:	[hmmsearch]	140 of 140 task(s) completed
INFO:	Results:	C:72.9%[S:72.5%,D:0.4%],F:9.0%,M:18.1%,n:255	   

INFO:	

	--------------------------------------------------
	|Results from dataset eukaryota_odb10             |
	--------------------------------------------------
	|C:72.9%[S:72.5%,D:0.4%],F:9.0%,M:18.1%,n:255     |
	|186	Complete BUSCOs (C)                       |
	|185	Complete and single-copy BUSCOs (S)       |
	|1	Complete and duplicated BUSCOs (D)        |
	|23	Fragmented BUSCOs (F)                     |
	|46	Missing BUSCOs (M)                        |
	|255	Total BUSCO groups searched               |
	--------------------------------------------------
INFO:	BUSCO analysis done with WARNING(s). Total running time: 264 seconds

***** Summary of warnings: *****
WARNING:busco.BuscoTools	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.

INFO:	Results written in /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/busco/f5c6fe3e1b62073d99445f9c

busco_comparator.log

173 common BUSCO genes identified:
1076134at2759,1275837at2759,1220881at2759,621827at2759,418107at2759,1251252at2759,1346165at2759,937686at2759,1284731at2759,1623701at2759,396755at2759,1173229at2759,142542at2759,674160at2759,1398309at2759,1065019at2759,905026at2759,1440961at2759,549762at2759,1421503at2759,1228942at2759,817008at2759,464990at2759,392369at2759,1106766at2759,1010730at2759,1588798at2759,604979at2759,1157302at2759,1090038at2759,97116at2759,1258856at2759,671536at2759,1200489at2759,179362at2759,453044at2759,325552at2759,692986at2759,1490022at2759,1032689at2759,761109at2759,1085752at2759,734341at2759,944899at2759,1193442at2759,655400at2759,1428854at2759,1488436at2759,271586at2759,836599at2759,866359at2759,1525971at2759,719531at2759,1287094at2759,1287401at2759,1567796at2759,160593at2759,1355894at2759,801857at2759,1346432at2759,390348at2759,296129at2759,917326at2759,1079130at2759,1342242at2759,1430056at2759,1041560at2759,513979at2759,919955at2759,708105at2759,1087488at2759,1269244at2759,1405146at2759,375960at2759,1426075at2759,306227at2759,1178688at2759,887370at2759,946128at2759,1249159at2759,257318at2759,918816at2759,1217666at2759,1558822at2759,83779at2759,290630at2759,996662at2759,1094121at2759,779909at2759,1129824at2759,1257440at2759,1370304at2759,1441854at2759,245208at2759,1552706at2759,898782at2759,1001705at2759,1377237at2759,1323575at2759,759498at2759,736068at2759,720340at2759,1115196at2759,1194797at2759,582756at2759,924753at2759,156083at2759,1358374at2759,1545004at2759,1111142at2759,751335at2759,1404162at2759,320059at2759,1339553at2759,1620056at2759,1423847at2759,774318at2759,937275at2759,1138059at2759,1107630at2759,1260807at2759,1379600at2759,1445102at2759,1233814at2759,450058at2759,1248958at2759,543764at2759,671846at2759,341721at2759,973442at2759,768809at2759,1405073at2759,388820at2759,687505at2759,1003258at2759,324863at2759,975557at2759,1459797at2759,1236198at2759,1348942at2759,1051021at2759,1197019at2759,1488235at2759,1291729at2759,1247641at2759,1304061at2759,664730at2759,865202at2759,673132at2759,1128607at2759,855834at2759,1454155at2759,974865at2759,1434266at2759,734666at2759,1432328at2759,1474000at2759,176625at2759,100698at2759,1182451at2759,1079827at2759,1057950at2759,1030907at2759,1096688at2759,911863at2759,345441at2759,1194691at2759,844748at2759,923657at2759,1222562at2759,1259741at2759,891751at2759,878143at2759
busco_be272580eb9891f4e5f02bd3.log

INFO:	***** Start a BUSCO v4.1.4 analysis, current time: 07/06/2021 11:58:33 *****
INFO:	Configuring BUSCO with /opt/mosga/scripts/busco_config.ini
INFO:	Mode is genome
INFO:	'Force' option selected; overwriting previous results directory
INFO:	Input file is /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/be272580eb9891f4e5f02bd3
INFO:	Downloading information on latest versions of BUSCO data...
WARNING:	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.
INFO:	Running BUSCO using lineage dataset eukaryota_odb10 (eukaryota, 2020-09-10)
INFO:	Running 1 job(s) on makeblastdb, starting at 07/06/2021 11:58:33
INFO:	Creating BLAST database with input file
INFO:	[makeblastdb]	1 of 1 task(s) completed
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 11:58:33
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using fly as species:
INFO:	Running 258 job(s) on augustus, starting at 07/06/2021 11:58:47
INFO:	[augustus]	26 of 258 task(s) completed
INFO:	[augustus]	52 of 258 task(s) completed
INFO:	[augustus]	78 of 258 task(s) completed
INFO:	[augustus]	104 of 258 task(s) completed
INFO:	[augustus]	130 of 258 task(s) completed
INFO:	[augustus]	155 of 258 task(s) completed
INFO:	[augustus]	181 of 258 task(s) completed
INFO:	[augustus]	207 of 258 task(s) completed
INFO:	[augustus]	233 of 258 task(s) completed
INFO:	[augustus]	258 of 258 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 244 job(s) on hmmsearch, starting at 07/06/2021 12:03:39
INFO:	[hmmsearch]	25 of 244 task(s) completed
INFO:	[hmmsearch]	49 of 244 task(s) completed
INFO:	[hmmsearch]	98 of 244 task(s) completed
INFO:	[hmmsearch]	122 of 244 task(s) completed
INFO:	[hmmsearch]	122 of 244 task(s) completed
INFO:	[hmmsearch]	147 of 244 task(s) completed
INFO:	[hmmsearch]	171 of 244 task(s) completed
INFO:	[hmmsearch]	196 of 244 task(s) completed
INFO:	[hmmsearch]	220 of 244 task(s) completed
INFO:	[hmmsearch]	244 of 244 task(s) completed
INFO:	Starting second step of analysis. The gene predictor Augustus is retrained using the results from the initial run to yield more accurate results.
INFO:	Extracting missing and fragmented buscos from the file ancestral_variants...
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 12:03:40
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Converting predicted genes to short genbank files
INFO:	Running 171 job(s) on gff2gbSmallDNA.pl, starting at 07/06/2021 12:04:27
INFO:	[gff2gbSmallDNA.pl]	18 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	35 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	52 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	69 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	86 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	103 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	120 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	137 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	154 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	171 of 171 task(s) completed
INFO:	All files converted to short genbank files, now training Augustus using Single-Copy Complete BUSCOs
INFO:	Running 1 job(s) on new_species.pl, starting at 07/06/2021 12:04:28
INFO:	[new_species.pl]	1 of 1 task(s) completed
INFO:	Running 1 job(s) on etraining, starting at 07/06/2021 12:04:28
INFO:	[etraining]	1 of 1 task(s) completed
INFO:	Re-running Augustus with the new metaparameters, number of target BUSCOs: 83
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using BUSCO_be272580eb9891f4e5f02bd3 as species:
INFO:	Running 94 job(s) on augustus, starting at 07/06/2021 12:04:28
INFO:	[augustus]	10 of 94 task(s) completed
INFO:	[augustus]	19 of 94 task(s) completed
INFO:	[augustus]	29 of 94 task(s) completed
INFO:	[augustus]	38 of 94 task(s) completed
INFO:	[augustus]	48 of 94 task(s) completed
INFO:	[augustus]	57 of 94 task(s) completed
INFO:	[augustus]	66 of 94 task(s) completed
INFO:	[augustus]	76 of 94 task(s) completed
INFO:	[augustus]	85 of 94 task(s) completed
INFO:	[augustus]	94 of 94 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 94 job(s) on hmmsearch, starting at 07/06/2021 12:06:08
INFO:	[hmmsearch]	10 of 94 task(s) completed
INFO:	[hmmsearch]	19 of 94 task(s) completed
INFO:	[hmmsearch]	29 of 94 task(s) completed
INFO:	[hmmsearch]	38 of 94 task(s) completed
INFO:	[hmmsearch]	48 of 94 task(s) completed
INFO:	[hmmsearch]	57 of 94 task(s) completed
INFO:	[hmmsearch]	66 of 94 task(s) completed
INFO:	[hmmsearch]	76 of 94 task(s) completed
INFO:	[hmmsearch]	85 of 94 task(s) completed
INFO:	[hmmsearch]	94 of 94 task(s) completed
INFO:	Results:	C:87.1%[S:86.7%,D:0.4%],F:2.0%,M:10.9%,n:255	   

INFO:	

	--------------------------------------------------
	|Results from dataset eukaryota_odb10             |
	--------------------------------------------------
	|C:87.1%[S:86.7%,D:0.4%],F:2.0%,M:10.9%,n:255     |
	|222	Complete BUSCOs (C)                       |
	|221	Complete and single-copy BUSCOs (S)       |
	|1	Complete and duplicated BUSCOs (D)        |
	|5	Fragmented BUSCOs (F)                     |
	|28	Missing BUSCOs (M)                        |
	|255	Total BUSCO groups searched               |
	--------------------------------------------------
INFO:	BUSCO analysis done with WARNING(s). Total running time: 455 seconds

***** Summary of warnings: *****
WARNING:busco.BuscoTools	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.

INFO:	Results written in /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/busco/be272580eb9891f4e5f02bd3

busco_a5559a11b76e89eb5e819001.log

INFO:	***** Start a BUSCO v4.1.4 analysis, current time: 07/06/2021 11:06:02 *****
INFO:	Configuring BUSCO with /opt/mosga/scripts/busco_config.ini
INFO:	Mode is genome
INFO:	'Force' option selected; overwriting previous results directory
INFO:	Input file is /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/a5559a11b76e89eb5e819001
INFO:	Downloading information on latest versions of BUSCO data...
WARNING:	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.
INFO:	Running BUSCO using lineage dataset eukaryota_odb10 (eukaryota, 2020-09-10)
INFO:	Running 1 job(s) on makeblastdb, starting at 07/06/2021 11:06:03
INFO:	Creating BLAST database with input file
INFO:	[makeblastdb]	1 of 1 task(s) completed
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 11:06:03
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using fly as species:
INFO:	Running 262 job(s) on augustus, starting at 07/06/2021 11:06:17
INFO:	[augustus]	27 of 262 task(s) completed
INFO:	[augustus]	53 of 262 task(s) completed
INFO:	[augustus]	79 of 262 task(s) completed
INFO:	[augustus]	105 of 262 task(s) completed
INFO:	[augustus]	131 of 262 task(s) completed
INFO:	[augustus]	158 of 262 task(s) completed
INFO:	[augustus]	184 of 262 task(s) completed
INFO:	[augustus]	210 of 262 task(s) completed
INFO:	[augustus]	236 of 262 task(s) completed
INFO:	[augustus]	262 of 262 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 239 job(s) on hmmsearch, starting at 07/06/2021 11:11:19
INFO:	[hmmsearch]	24 of 239 task(s) completed
INFO:	[hmmsearch]	48 of 239 task(s) completed
INFO:	[hmmsearch]	72 of 239 task(s) completed
INFO:	[hmmsearch]	96 of 239 task(s) completed
INFO:	[hmmsearch]	120 of 239 task(s) completed
INFO:	[hmmsearch]	144 of 239 task(s) completed
INFO:	[hmmsearch]	168 of 239 task(s) completed
INFO:	[hmmsearch]	192 of 239 task(s) completed
INFO:	[hmmsearch]	216 of 239 task(s) completed
INFO:	[hmmsearch]	239 of 239 task(s) completed
INFO:	Starting second step of analysis. The gene predictor Augustus is retrained using the results from the initial run to yield more accurate results.
INFO:	Extracting missing and fragmented buscos from the file ancestral_variants...
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 11:11:20
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Converting predicted genes to short genbank files
INFO:	Running 175 job(s) on gff2gbSmallDNA.pl, starting at 07/06/2021 11:12:06
INFO:	[gff2gbSmallDNA.pl]	18 of 175 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	35 of 175 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	53 of 175 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	70 of 175 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	88 of 175 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	105 of 175 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	123 of 175 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	140 of 175 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	158 of 175 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	175 of 175 task(s) completed
INFO:	All files converted to short genbank files, now training Augustus using Single-Copy Complete BUSCOs
INFO:	Running 1 job(s) on new_species.pl, starting at 07/06/2021 11:12:07
INFO:	[new_species.pl]	1 of 1 task(s) completed
INFO:	Running 1 job(s) on etraining, starting at 07/06/2021 11:12:07
INFO:	[etraining]	1 of 1 task(s) completed
INFO:	Re-running Augustus with the new metaparameters, number of target BUSCOs: 79
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using BUSCO_a5559a11b76e89eb5e819001 as species:
INFO:	Running 90 job(s) on augustus, starting at 07/06/2021 11:12:08
INFO:	[augustus]	9 of 90 task(s) completed
INFO:	[augustus]	18 of 90 task(s) completed
INFO:	[augustus]	27 of 90 task(s) completed
INFO:	[augustus]	36 of 90 task(s) completed
INFO:	[augustus]	45 of 90 task(s) completed
INFO:	[augustus]	54 of 90 task(s) completed
INFO:	[augustus]	63 of 90 task(s) completed
INFO:	[augustus]	72 of 90 task(s) completed
INFO:	[augustus]	81 of 90 task(s) completed
INFO:	[augustus]	90 of 90 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 90 job(s) on hmmsearch, starting at 07/06/2021 11:13:44
INFO:	[hmmsearch]	9 of 90 task(s) completed
INFO:	[hmmsearch]	18 of 90 task(s) completed
INFO:	[hmmsearch]	36 of 90 task(s) completed
INFO:	[hmmsearch]	45 of 90 task(s) completed
INFO:	[hmmsearch]	45 of 90 task(s) completed
INFO:	[hmmsearch]	54 of 90 task(s) completed
INFO:	[hmmsearch]	63 of 90 task(s) completed
INFO:	[hmmsearch]	72 of 90 task(s) completed
INFO:	[hmmsearch]	81 of 90 task(s) completed
INFO:	[hmmsearch]	90 of 90 task(s) completed
INFO:	Results:	C:87.9%[S:87.5%,D:0.4%],F:2.7%,M:9.4%,n:255	   

INFO:	

	--------------------------------------------------
	|Results from dataset eukaryota_odb10             |
	--------------------------------------------------
	|C:87.9%[S:87.5%,D:0.4%],F:2.7%,M:9.4%,n:255      |
	|224	Complete BUSCOs (C)                       |
	|223	Complete and single-copy BUSCOs (S)       |
	|1	Complete and duplicated BUSCOs (D)        |
	|7	Fragmented BUSCOs (F)                     |
	|24	Missing BUSCOs (M)                        |
	|255	Total BUSCO groups searched               |
	--------------------------------------------------
INFO:	BUSCO analysis done with WARNING(s). Total running time: 462 seconds

***** Summary of warnings: *****
WARNING:busco.BuscoTools	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.

INFO:	Results written in /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/busco/a5559a11b76e89eb5e819001

busco_99263d098be68af7a2289f00.log

INFO:	***** Start a BUSCO v4.1.4 analysis, current time: 07/06/2021 12:15:53 *****
INFO:	Configuring BUSCO with /opt/mosga/scripts/busco_config.ini
INFO:	Mode is genome
INFO:	'Force' option selected; overwriting previous results directory
INFO:	Input file is /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/99263d098be68af7a2289f00
INFO:	Downloading information on latest versions of BUSCO data...
WARNING:	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.
INFO:	Running BUSCO using lineage dataset eukaryota_odb10 (eukaryota, 2020-09-10)
INFO:	Running 1 job(s) on makeblastdb, starting at 07/06/2021 12:15:53
INFO:	Creating BLAST database with input file
INFO:	[makeblastdb]	1 of 1 task(s) completed
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 12:15:53
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using fly as species:
INFO:	Running 264 job(s) on augustus, starting at 07/06/2021 12:16:07
INFO:	[augustus]	27 of 264 task(s) completed
INFO:	[augustus]	53 of 264 task(s) completed
INFO:	[augustus]	80 of 264 task(s) completed
INFO:	[augustus]	106 of 264 task(s) completed
INFO:	[augustus]	132 of 264 task(s) completed
INFO:	[augustus]	159 of 264 task(s) completed
INFO:	[augustus]	185 of 264 task(s) completed
INFO:	[augustus]	212 of 264 task(s) completed
INFO:	[augustus]	238 of 264 task(s) completed
INFO:	[augustus]	264 of 264 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 245 job(s) on hmmsearch, starting at 07/06/2021 12:21:43
INFO:	[hmmsearch]	25 of 245 task(s) completed
INFO:	[hmmsearch]	49 of 245 task(s) completed
INFO:	[hmmsearch]	74 of 245 task(s) completed
INFO:	[hmmsearch]	98 of 245 task(s) completed
INFO:	[hmmsearch]	147 of 245 task(s) completed
INFO:	[hmmsearch]	172 of 245 task(s) completed
INFO:	[hmmsearch]	196 of 245 task(s) completed
INFO:	[hmmsearch]	221 of 245 task(s) completed
INFO:	[hmmsearch]	245 of 245 task(s) completed
INFO:	Starting second step of analysis. The gene predictor Augustus is retrained using the results from the initial run to yield more accurate results.
INFO:	Extracting missing and fragmented buscos from the file ancestral_variants...
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 12:21:44
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Converting predicted genes to short genbank files
INFO:	Running 171 job(s) on gff2gbSmallDNA.pl, starting at 07/06/2021 12:22:35
INFO:	[gff2gbSmallDNA.pl]	18 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	35 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	52 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	69 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	86 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	103 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	120 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	137 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	171 of 171 task(s) completed
INFO:	All files converted to short genbank files, now training Augustus using Single-Copy Complete BUSCOs
INFO:	Running 1 job(s) on new_species.pl, starting at 07/06/2021 12:22:37
INFO:	[new_species.pl]	1 of 1 task(s) completed
INFO:	Running 1 job(s) on etraining, starting at 07/06/2021 12:22:37
INFO:	[etraining]	1 of 1 task(s) completed
INFO:	Re-running Augustus with the new metaparameters, number of target BUSCOs: 83
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using BUSCO_99263d098be68af7a2289f00 as species:
INFO:	Running 94 job(s) on augustus, starting at 07/06/2021 12:22:37
INFO:	[augustus]	10 of 94 task(s) completed
INFO:	[augustus]	19 of 94 task(s) completed
INFO:	[augustus]	29 of 94 task(s) completed
INFO:	[augustus]	38 of 94 task(s) completed
INFO:	[augustus]	48 of 94 task(s) completed
INFO:	[augustus]	57 of 94 task(s) completed
INFO:	[augustus]	66 of 94 task(s) completed
INFO:	[augustus]	76 of 94 task(s) completed
INFO:	[augustus]	85 of 94 task(s) completed
INFO:	[augustus]	94 of 94 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 94 job(s) on hmmsearch, starting at 07/06/2021 12:24:28
INFO:	[hmmsearch]	10 of 94 task(s) completed
INFO:	[hmmsearch]	19 of 94 task(s) completed
INFO:	[hmmsearch]	29 of 94 task(s) completed
INFO:	[hmmsearch]	38 of 94 task(s) completed
INFO:	[hmmsearch]	48 of 94 task(s) completed
INFO:	[hmmsearch]	57 of 94 task(s) completed
INFO:	[hmmsearch]	66 of 94 task(s) completed
INFO:	[hmmsearch]	76 of 94 task(s) completed
INFO:	[hmmsearch]	85 of 94 task(s) completed
INFO:	[hmmsearch]	94 of 94 task(s) completed
INFO:	Results:	C:87.1%[S:86.7%,D:0.4%],F:3.1%,M:9.8%,n:255	   

INFO:	

	--------------------------------------------------
	|Results from dataset eukaryota_odb10             |
	--------------------------------------------------
	|C:87.1%[S:86.7%,D:0.4%],F:3.1%,M:9.8%,n:255      |
	|222	Complete BUSCOs (C)                       |
	|221	Complete and single-copy BUSCOs (S)       |
	|1	Complete and duplicated BUSCOs (D)        |
	|8	Fragmented BUSCOs (F)                     |
	|25	Missing BUSCOs (M)                        |
	|255	Total BUSCO groups searched               |
	--------------------------------------------------
INFO:	BUSCO analysis done with WARNING(s). Total running time: 516 seconds

***** Summary of warnings: *****
WARNING:busco.BuscoTools	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.

INFO:	Results written in /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/busco/99263d098be68af7a2289f00

busco_606898290326c6c79d936d7e.log

INFO:	***** Start a BUSCO v4.1.4 analysis, current time: 07/06/2021 12:35:33 *****
INFO:	Configuring BUSCO with /opt/mosga/scripts/busco_config.ini
INFO:	Mode is genome
INFO:	'Force' option selected; overwriting previous results directory
INFO:	Input file is /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/606898290326c6c79d936d7e
INFO:	Downloading information on latest versions of BUSCO data...
WARNING:	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.
INFO:	Running BUSCO using lineage dataset eukaryota_odb10 (eukaryota, 2020-09-10)
INFO:	Running 1 job(s) on makeblastdb, starting at 07/06/2021 12:35:33
INFO:	Creating BLAST database with input file
INFO:	[makeblastdb]	1 of 1 task(s) completed
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 12:35:34
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using fly as species:
INFO:	Running 268 job(s) on augustus, starting at 07/06/2021 12:35:47
INFO:	[augustus]	27 of 268 task(s) completed
INFO:	[augustus]	54 of 268 task(s) completed
INFO:	[augustus]	81 of 268 task(s) completed
INFO:	[augustus]	108 of 268 task(s) completed
INFO:	[augustus]	135 of 268 task(s) completed
INFO:	[augustus]	161 of 268 task(s) completed
INFO:	[augustus]	188 of 268 task(s) completed
INFO:	[augustus]	215 of 268 task(s) completed
INFO:	[augustus]	242 of 268 task(s) completed
INFO:	[augustus]	268 of 268 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 252 job(s) on hmmsearch, starting at 07/06/2021 12:41:25
INFO:	[hmmsearch]	26 of 252 task(s) completed
INFO:	[hmmsearch]	51 of 252 task(s) completed
INFO:	[hmmsearch]	76 of 252 task(s) completed
INFO:	[hmmsearch]	101 of 252 task(s) completed
INFO:	[hmmsearch]	126 of 252 task(s) completed
INFO:	[hmmsearch]	152 of 252 task(s) completed
INFO:	[hmmsearch]	177 of 252 task(s) completed
INFO:	[hmmsearch]	202 of 252 task(s) completed
INFO:	[hmmsearch]	227 of 252 task(s) completed
INFO:	[hmmsearch]	252 of 252 task(s) completed
INFO:	Starting second step of analysis. The gene predictor Augustus is retrained using the results from the initial run to yield more accurate results.
INFO:	Extracting missing and fragmented buscos from the file ancestral_variants...
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 12:41:26
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Converting predicted genes to short genbank files
INFO:	Running 171 job(s) on gff2gbSmallDNA.pl, starting at 07/06/2021 12:42:14
INFO:	[gff2gbSmallDNA.pl]	18 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	35 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	52 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	86 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	103 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	120 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	137 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	154 of 171 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	171 of 171 task(s) completed
INFO:	All files converted to short genbank files, now training Augustus using Single-Copy Complete BUSCOs
INFO:	Running 1 job(s) on new_species.pl, starting at 07/06/2021 12:42:15
INFO:	[new_species.pl]	1 of 1 task(s) completed
INFO:	Running 1 job(s) on etraining, starting at 07/06/2021 12:42:15
INFO:	[etraining]	1 of 1 task(s) completed
INFO:	Re-running Augustus with the new metaparameters, number of target BUSCOs: 82
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using BUSCO_606898290326c6c79d936d7e as species:
INFO:	Running 91 job(s) on augustus, starting at 07/06/2021 12:42:15
INFO:	[augustus]	10 of 91 task(s) completed
INFO:	[augustus]	19 of 91 task(s) completed
INFO:	[augustus]	28 of 91 task(s) completed
INFO:	[augustus]	37 of 91 task(s) completed
INFO:	[augustus]	46 of 91 task(s) completed
INFO:	[augustus]	55 of 91 task(s) completed
INFO:	[augustus]	64 of 91 task(s) completed
INFO:	[augustus]	73 of 91 task(s) completed
INFO:	[augustus]	82 of 91 task(s) completed
INFO:	[augustus]	91 of 91 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 91 job(s) on hmmsearch, starting at 07/06/2021 12:43:39
INFO:	[hmmsearch]	10 of 91 task(s) completed
INFO:	[hmmsearch]	10 of 91 task(s) completed
INFO:	[hmmsearch]	19 of 91 task(s) completed
INFO:	[hmmsearch]	28 of 91 task(s) completed
INFO:	[hmmsearch]	37 of 91 task(s) completed
INFO:	[hmmsearch]	46 of 91 task(s) completed
INFO:	[hmmsearch]	55 of 91 task(s) completed
INFO:	[hmmsearch]	64 of 91 task(s) completed
INFO:	[hmmsearch]	73 of 91 task(s) completed
INFO:	[hmmsearch]	82 of 91 task(s) completed
INFO:	[hmmsearch]	91 of 91 task(s) completed
INFO:	Results:	C:86.3%[S:85.5%,D:0.8%],F:2.7%,M:11.0%,n:255	   

INFO:	

	--------------------------------------------------
	|Results from dataset eukaryota_odb10             |
	--------------------------------------------------
	|C:86.3%[S:85.5%,D:0.8%],F:2.7%,M:11.0%,n:255     |
	|220	Complete BUSCOs (C)                       |
	|218	Complete and single-copy BUSCOs (S)       |
	|2	Complete and duplicated BUSCOs (D)        |
	|7	Fragmented BUSCOs (F)                     |
	|28	Missing BUSCOs (M)                        |
	|255	Total BUSCO groups searched               |
	--------------------------------------------------
INFO:	BUSCO analysis done with WARNING(s). Total running time: 486 seconds

***** Summary of warnings: *****
WARNING:busco.BuscoTools	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.

INFO:	Results written in /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/busco/606898290326c6c79d936d7e

busco_1c00b031cdeac5a93e17d8e8.log

INFO:	***** Start a BUSCO v4.1.4 analysis, current time: 07/06/2021 12:43:40 *****
INFO:	Configuring BUSCO with /opt/mosga/scripts/busco_config.ini
INFO:	Mode is genome
INFO:	'Force' option selected; overwriting previous results directory
INFO:	Input file is /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/1c00b031cdeac5a93e17d8e8
INFO:	Downloading information on latest versions of BUSCO data...
WARNING:	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.
INFO:	Running BUSCO using lineage dataset eukaryota_odb10 (eukaryota, 2020-09-10)
INFO:	Running 1 job(s) on makeblastdb, starting at 07/06/2021 12:43:40
INFO:	Creating BLAST database with input file
INFO:	[makeblastdb]	1 of 1 task(s) completed
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 12:43:40
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using fly as species:
INFO:	Running 254 job(s) on augustus, starting at 07/06/2021 12:43:54
INFO:	[augustus]	26 of 254 task(s) completed
INFO:	[augustus]	51 of 254 task(s) completed
INFO:	[augustus]	77 of 254 task(s) completed
INFO:	[augustus]	102 of 254 task(s) completed
INFO:	[augustus]	127 of 254 task(s) completed
INFO:	[augustus]	153 of 254 task(s) completed
INFO:	[augustus]	178 of 254 task(s) completed
INFO:	[augustus]	204 of 254 task(s) completed
INFO:	[augustus]	229 of 254 task(s) completed
INFO:	[augustus]	254 of 254 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 234 job(s) on hmmsearch, starting at 07/06/2021 12:48:49
INFO:	[hmmsearch]	24 of 234 task(s) completed
INFO:	[hmmsearch]	47 of 234 task(s) completed
INFO:	[hmmsearch]	71 of 234 task(s) completed
INFO:	[hmmsearch]	94 of 234 task(s) completed
INFO:	[hmmsearch]	117 of 234 task(s) completed
INFO:	[hmmsearch]	141 of 234 task(s) completed
INFO:	[hmmsearch]	164 of 234 task(s) completed
INFO:	[hmmsearch]	188 of 234 task(s) completed
INFO:	[hmmsearch]	211 of 234 task(s) completed
INFO:	[hmmsearch]	234 of 234 task(s) completed
INFO:	Starting second step of analysis. The gene predictor Augustus is retrained using the results from the initial run to yield more accurate results.
INFO:	Extracting missing and fragmented buscos from the file ancestral_variants...
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 12:48:50
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Converting predicted genes to short genbank files
INFO:	Running 165 job(s) on gff2gbSmallDNA.pl, starting at 07/06/2021 12:49:42
INFO:	[gff2gbSmallDNA.pl]	17 of 165 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	33 of 165 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	50 of 165 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	50 of 165 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	66 of 165 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	83 of 165 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	99 of 165 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	116 of 165 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	132 of 165 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	149 of 165 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	165 of 165 task(s) completed
INFO:	All files converted to short genbank files, now training Augustus using Single-Copy Complete BUSCOs
INFO:	Running 1 job(s) on new_species.pl, starting at 07/06/2021 12:49:43
INFO:	[new_species.pl]	1 of 1 task(s) completed
INFO:	Running 1 job(s) on etraining, starting at 07/06/2021 12:49:43
INFO:	[etraining]	1 of 1 task(s) completed
INFO:	Re-running Augustus with the new metaparameters, number of target BUSCOs: 89
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using BUSCO_1c00b031cdeac5a93e17d8e8 as species:
INFO:	Running 99 job(s) on augustus, starting at 07/06/2021 12:49:43
INFO:	[augustus]	10 of 99 task(s) completed
INFO:	[augustus]	20 of 99 task(s) completed
INFO:	[augustus]	30 of 99 task(s) completed
INFO:	[augustus]	40 of 99 task(s) completed
INFO:	[augustus]	50 of 99 task(s) completed
INFO:	[augustus]	60 of 99 task(s) completed
INFO:	[augustus]	70 of 99 task(s) completed
INFO:	[augustus]	80 of 99 task(s) completed
INFO:	[augustus]	90 of 99 task(s) completed
INFO:	[augustus]	99 of 99 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 99 job(s) on hmmsearch, starting at 07/06/2021 12:51:30
INFO:	[hmmsearch]	10 of 99 task(s) completed
INFO:	[hmmsearch]	30 of 99 task(s) completed
INFO:	[hmmsearch]	40 of 99 task(s) completed
INFO:	[hmmsearch]	50 of 99 task(s) completed
INFO:	[hmmsearch]	60 of 99 task(s) completed
INFO:	[hmmsearch]	70 of 99 task(s) completed
INFO:	[hmmsearch]	80 of 99 task(s) completed
INFO:	[hmmsearch]	90 of 99 task(s) completed
INFO:	[hmmsearch]	99 of 99 task(s) completed
INFO:	Results:	C:87.5%[S:87.1%,D:0.4%],F:1.6%,M:10.9%,n:255	   

INFO:	

	--------------------------------------------------
	|Results from dataset eukaryota_odb10             |
	--------------------------------------------------
	|C:87.5%[S:87.1%,D:0.4%],F:1.6%,M:10.9%,n:255     |
	|223	Complete BUSCOs (C)                       |
	|222	Complete and single-copy BUSCOs (S)       |
	|1	Complete and duplicated BUSCOs (D)        |
	|4	Fragmented BUSCOs (F)                     |
	|28	Missing BUSCOs (M)                        |
	|255	Total BUSCO groups searched               |
	--------------------------------------------------
INFO:	BUSCO analysis done with WARNING(s). Total running time: 471 seconds

***** Summary of warnings: *****
WARNING:busco.BuscoTools	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.

INFO:	Results written in /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/busco/1c00b031cdeac5a93e17d8e8

busco_18c62eb443972a0e6c96bf5d.log

INFO:	***** Start a BUSCO v4.1.4 analysis, current time: 07/06/2021 10:22:19 *****
INFO:	Configuring BUSCO with /opt/mosga/scripts/busco_config.ini
INFO:	Mode is genome
INFO:	'Force' option selected; overwriting previous results directory
INFO:	Input file is /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/18c62eb443972a0e6c96bf5d
INFO:	Downloading information on latest versions of BUSCO data...
INFO:	Downloading file 'https://busco-data.ezlab.org/v4/data/lineages/eukaryota_odb10.2020-09-10.tar.gz'
INFO:	Decompressing file '/opt/mosga/tools/BUSCO/downloads/lineages/eukaryota_odb10.tar.gz'
WARNING:	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.
INFO:	Running BUSCO using lineage dataset eukaryota_odb10 (eukaryota, 2020-09-10)
INFO:	Running 1 job(s) on makeblastdb, starting at 07/06/2021 10:22:22
INFO:	Creating BLAST database with input file
INFO:	[makeblastdb]	1 of 1 task(s) completed
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 10:22:22
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using fly as species:
INFO:	Running 261 job(s) on augustus, starting at 07/06/2021 10:22:36
INFO:	[augustus]	27 of 261 task(s) completed
INFO:	[augustus]	53 of 261 task(s) completed
INFO:	[augustus]	79 of 261 task(s) completed
INFO:	[augustus]	105 of 261 task(s) completed
INFO:	[augustus]	131 of 261 task(s) completed
INFO:	[augustus]	157 of 261 task(s) completed
INFO:	[augustus]	183 of 261 task(s) completed
INFO:	[augustus]	209 of 261 task(s) completed
INFO:	[augustus]	235 of 261 task(s) completed
INFO:	[augustus]	261 of 261 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 240 job(s) on hmmsearch, starting at 07/06/2021 10:27:29
INFO:	[hmmsearch]	48 of 240 task(s) completed
INFO:	[hmmsearch]	72 of 240 task(s) completed
INFO:	[hmmsearch]	96 of 240 task(s) completed
INFO:	[hmmsearch]	120 of 240 task(s) completed
INFO:	[hmmsearch]	168 of 240 task(s) completed
INFO:	[hmmsearch]	192 of 240 task(s) completed
INFO:	[hmmsearch]	216 of 240 task(s) completed
INFO:	[hmmsearch]	240 of 240 task(s) completed
INFO:	Starting second step of analysis. The gene predictor Augustus is retrained using the results from the initial run to yield more accurate results.
INFO:	Extracting missing and fragmented buscos from the file ancestral_variants...
INFO:	Running a BLAST search for BUSCOs against created database
INFO:	Running 1 job(s) on tblastn, starting at 07/06/2021 10:27:30
INFO:	[tblastn]	1 of 1 task(s) completed
INFO:	Converting predicted genes to short genbank files
INFO:	Running 176 job(s) on gff2gbSmallDNA.pl, starting at 07/06/2021 10:28:11
INFO:	[gff2gbSmallDNA.pl]	18 of 176 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	36 of 176 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	53 of 176 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	71 of 176 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	106 of 176 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	124 of 176 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	141 of 176 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	159 of 176 task(s) completed
INFO:	[gff2gbSmallDNA.pl]	176 of 176 task(s) completed
INFO:	All files converted to short genbank files, now training Augustus using Single-Copy Complete BUSCOs
INFO:	Running 1 job(s) on new_species.pl, starting at 07/06/2021 10:28:13
INFO:	[new_species.pl]	1 of 1 task(s) completed
INFO:	Running 1 job(s) on etraining, starting at 07/06/2021 10:28:13
INFO:	[etraining]	1 of 1 task(s) completed
INFO:	Re-running Augustus with the new metaparameters, number of target BUSCOs: 78
INFO:	Running Augustus gene predictor on BLAST search results.
INFO:	Running Augustus prediction using BUSCO_18c62eb443972a0e6c96bf5d as species:
INFO:	Running 88 job(s) on augustus, starting at 07/06/2021 10:28:13
INFO:	[augustus]	9 of 88 task(s) completed
INFO:	[augustus]	18 of 88 task(s) completed
INFO:	[augustus]	27 of 88 task(s) completed
INFO:	[augustus]	36 of 88 task(s) completed
INFO:	[augustus]	45 of 88 task(s) completed
INFO:	[augustus]	53 of 88 task(s) completed
INFO:	[augustus]	62 of 88 task(s) completed
INFO:	[augustus]	71 of 88 task(s) completed
INFO:	[augustus]	80 of 88 task(s) completed
INFO:	[augustus]	88 of 88 task(s) completed
INFO:	Extracting predicted proteins...
INFO:	***** Run HMMER on gene sequences *****
INFO:	Running 88 job(s) on hmmsearch, starting at 07/06/2021 10:29:38
INFO:	[hmmsearch]	9 of 88 task(s) completed
INFO:	[hmmsearch]	18 of 88 task(s) completed
INFO:	[hmmsearch]	18 of 88 task(s) completed
INFO:	[hmmsearch]	27 of 88 task(s) completed
INFO:	[hmmsearch]	36 of 88 task(s) completed
INFO:	[hmmsearch]	45 of 88 task(s) completed
INFO:	[hmmsearch]	53 of 88 task(s) completed
INFO:	[hmmsearch]	62 of 88 task(s) completed
INFO:	[hmmsearch]	71 of 88 task(s) completed
INFO:	[hmmsearch]	80 of 88 task(s) completed
INFO:	[hmmsearch]	88 of 88 task(s) completed
INFO:	Results:	C:89.0%[S:88.6%,D:0.4%],F:2.7%,M:8.3%,n:255	   

INFO:	

	--------------------------------------------------
	|Results from dataset eukaryota_odb10             |
	--------------------------------------------------
	|C:89.0%[S:88.6%,D:0.4%],F:2.7%,M:8.3%,n:255      |
	|227	Complete BUSCOs (C)                       |
	|226	Complete and single-copy BUSCOs (S)       |
	|1	Complete and duplicated BUSCOs (D)        |
	|7	Fragmented BUSCOs (F)                     |
	|21	Missing BUSCOs (M)                        |
	|255	Total BUSCO groups searched               |
	--------------------------------------------------
INFO:	BUSCO analysis done with WARNING(s). Total running time: 440 seconds

***** Summary of warnings: *****
WARNING:busco.BuscoTools	You are using BLAST version 2.9.0+. This is known to yield inconsistent results when multithreading. BLAST will run on a single core as a result. For performance improvement, please upgrade to BLAST 2.10.1+.

INFO:	Results written in /opt/mosga/snakemake/../gui/uploads/9c2cb5d3/busco/18c62eb443972a0e6c96bf5d